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	<title>Gol Dorrazehi, auteur sur Soumillion Laboratory</title>
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	<description>Evolution. Directed.</description>
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	<title>Gol Dorrazehi, auteur sur Soumillion Laboratory</title>
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		<title>Chromosomal Libraries Chapter is out!</title>
		<link>https://sites.uclouvain.be/soumillionlab/2020/07/27/chromosomal-libraries/</link>
					<comments>https://sites.uclouvain.be/soumillionlab/2020/07/27/chromosomal-libraries/#respond</comments>
		
		<dc:creator><![CDATA[Gol Dorrazehi]]></dc:creator>
		<pubDate>Mon, 27 Jul 2020 10:23:19 +0000</pubDate>
				<category><![CDATA[News]]></category>
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					<description><![CDATA[<p>A lot of the work we do in the laboratory is trying to find better ways to do Directed Evolution. One of the thing we believe is that expressing libraries in their native genomic context let you navigate the fitness</p>
<p>L’article <a href="https://sites.uclouvain.be/soumillionlab/2020/07/27/chromosomal-libraries/">Chromosomal Libraries Chapter is out!</a> est apparu en premier sur <a href="https://sites.uclouvain.be/soumillionlab">Soumillion Laboratory</a>.</p>
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<p>A lot of the work we do in the laboratory is trying to find better ways to do Directed Evolution. One of the thing we believe is that expressing libraries in their native genomic context let you navigate the fitness landscape better. <br><br>If you want to find out how exactly we  build those libraries, the detailed protocols we use, both in <em>E. coli</em> and in <em>S. thermophilus</em> have now been published as a <a href="https://link.springer.com/protocol/10.1007%2F978-1-0716-0720-6_11">book chapter</a> by Springer Protocols. <br><br>&#8220;Dorrazehi G.M., Worms S., Chirakadavil J.B., Mignolet J., Hols P., Soumillion P. (2020) Building Scarless Gene Libraries in the Chromosome of Bacteria. In: Iranzo O., Roque A. (eds) Peptide and Protein Engineering. Springer Protocols Handbooks. Humana, New York, NY<br><br>Open access:<br><a href="https://dial.uclouvain.be/pr/boreal/object/boreal:231618">https://dial.uclouvain.be/pr/boreal/object/boreal:231618</a></p>
<p>L’article <a href="https://sites.uclouvain.be/soumillionlab/2020/07/27/chromosomal-libraries/">Chromosomal Libraries Chapter is out!</a> est apparu en premier sur <a href="https://sites.uclouvain.be/soumillionlab">Soumillion Laboratory</a>.</p>
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		<title>Journal Club S01E03</title>
		<link>https://sites.uclouvain.be/soumillionlab/2019/02/27/journal-club-s01e03/</link>
					<comments>https://sites.uclouvain.be/soumillionlab/2019/02/27/journal-club-s01e03/#respond</comments>
		
		<dc:creator><![CDATA[Gol Dorrazehi]]></dc:creator>
		<pubDate>Wed, 27 Feb 2019 14:14:21 +0000</pubDate>
				<category><![CDATA[News]]></category>
		<guid isPermaLink="false">https://sites.uclouvain.be/soumillionlab/?p=5023</guid>

					<description><![CDATA[<p>Discussion on Molecular Causes of Evolvability An interesting review on &#8220;The causes of evolvability and their evolution&#8221;, published by Payne and Wanger (2018), is discussed. Three major categories on the research of evolvability are discussed: phenotypic heterogeneity, mutational robustness and</p>
<p>L’article <a href="https://sites.uclouvain.be/soumillionlab/2019/02/27/journal-club-s01e03/">Journal Club S01E03</a> est apparu en premier sur <a href="https://sites.uclouvain.be/soumillionlab">Soumillion Laboratory</a>.</p>
]]></description>
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<p><strong>Discussion on Molecular Causes of Evolvability</strong></p>



<figure class="wp-block-image"><img fetchpriority="high" decoding="async" width="960" height="720" src="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/02/Evolvability_Journal-Club.jpg" alt="" class="wp-image-5033" srcset="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/02/Evolvability_Journal-Club.jpg 960w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/02/Evolvability_Journal-Club-300x225.jpg 300w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/02/Evolvability_Journal-Club-768x576.jpg 768w" sizes="(max-width: 960px) 100vw, 960px" /></figure>



<p>An interesting review on &#8220;The causes of evolvability and their evolution&#8221;, published by Payne and Wanger (2018), is discussed. Three major categories on the research of evolvability are discussed: <strong>phenotypic heterogeneity</strong>, <strong>mutational robustness</strong> and <strong>adaptive landscape topography:</strong></p>



<figure class="wp-block-image is-resized"><img decoding="async" src="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide2.jpg" alt="" class="wp-image-5823" width="622" height="408" srcset="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide2.jpg 809w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide2-300x197.jpg 300w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide2-768x504.jpg 768w" sizes="(max-width: 622px) 100vw, 622px" /></figure>



<p> <strong>Phenotypic heterogeneity</strong> caused by non-genetic mechanisms are discussed:</p>



<figure class="wp-block-image is-resized"><img decoding="async" src="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide3.jpg" alt="" class="wp-image-5833" width="643" height="421" srcset="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide3.jpg 809w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide3-300x197.jpg 300w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide3-768x504.jpg 768w" sizes="(max-width: 643px) 100vw, 643px" /></figure>



<p><strong>Robustness </strong>against mutations is allowing phenotypes to tolerate more genetic diversification without any change in final behaviour:</p>



<figure class="wp-block-image is-resized"><img loading="lazy" decoding="async" src="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide4.jpg" alt="" class="wp-image-5843" width="604" height="396" srcset="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide4.jpg 809w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide4-300x197.jpg 300w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide4-768x504.jpg 768w" sizes="(max-width: 604px) 100vw, 604px" /></figure>



<p>The location of an individual or a population on an <strong>adaptive landscape, </strong>determine the degree of evolvability towards the highest adaptation:</p>



<figure class="wp-block-image is-resized"><img loading="lazy" decoding="async" src="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide5.jpg" alt="" class="wp-image-5853" width="601" height="394" srcset="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide5.jpg 809w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide5-300x197.jpg 300w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide5-768x504.jpg 768w" sizes="(max-width: 601px) 100vw, 601px" /></figure>



<figure class="wp-block-image is-resized"><img loading="lazy" decoding="async" src="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide6.jpg" alt="" class="wp-image-5863" width="619" height="406" srcset="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide6.jpg 809w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide6-300x197.jpg 300w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide6-768x504.jpg 768w" sizes="(max-width: 619px) 100vw, 619px" /></figure>



<p><strong>Causes of evolvability</strong> highlighted here — phenotypic heterogeneity, mutational robustness and adaptive landscapes — are themselves subject to evolutionary change:</p>



<figure class="wp-block-image is-resized"><img loading="lazy" decoding="async" src="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide7.jpg" alt="" class="wp-image-5873" width="610" height="400" srcset="https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide7.jpg 809w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide7-300x197.jpg 300w, https://sites.uclouvain.be/soumillionlab/wp-content/uploads/2019/03/Slide7-768x504.jpg 768w" sizes="(max-width: 610px) 100vw, 610px" /></figure>



<p>Leave your comments about molecular causes of evolvability and its impact on the traditional dogma of &#8220;Evolution&#8221;: </p>
<p>L’article <a href="https://sites.uclouvain.be/soumillionlab/2019/02/27/journal-club-s01e03/">Journal Club S01E03</a> est apparu en premier sur <a href="https://sites.uclouvain.be/soumillionlab">Soumillion Laboratory</a>.</p>
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