Cell segmentation in mice embryos

This page gives access to the mice embryo dataset for cell segmentation and tracking. Ground-truth data are also provided.

Terms of use: This dataset is available for non-commercial research in video signal processing only. We kindly ask you to cite the paper [1] when using this dataset (in publications, video demonstrations...).


  • The dataset is available here. The images are available in .CZI format. The dataset consists of 25 different time points with 21 stacks per time point.
  • Some ground-truth data is also provided here. The ground-truth is available in multiple archives for different time points and multiple stacks. The data is provided in .ROI format.

Related publications:

[1] Browet, Arnaud; De Vleeschouwer, Christophe; Jacques, Laurent. CELL SEGMENTATION WITH RANDOM FERNS AND GRAPH-CUTS. Submitted to the International Conference on Image Processing (ICIP), 2016.

If necessary, please contact the coordinator: Christophe De Vleeschouwer, christophe.devleeschouwer@uclouvain.be.

Last updated March 16, 2016, at 03:12 PM